
DNA codes for life, but how? It is the blue
print for the chemicals that make up our body. DNA tells the body
what proteins to make which in turn carry out the functions of the cell,
and form the structures of the cell. How does DNA code for the proteins
and what are proteins made of? Proteins are made of Amino
Acids which are bonded together in chains during transcription.
To determine what Amino Acids to bond together, certain enzymes have to
"read" the DNA strands, construct an RNA strand that compliments the DNA
strand, and then put together the Amino Acid chain.
DNA to RNA
Remember the structure of DNA
and chromosomes. There are multiple genes on each DNA strand that
spans the chromosome. When the time comes to make a certain protein
from the code of a certain gene, the cell does not need to read the whole
DNA strand. Instead, it only reads that gene, this being the most
sensible thing to do. There are a few enzymes that help this process
to work. The first of which are the Basal
Factors which are a set of proteins that mark
the promoter region
or the beginning of the gene that is to be read. The end of the gene
is marked by the Enhancer
Region with the Activator
proteins (transcription factors). From
the promoter region and the enhancer region, transcription will take place.
The first step begins with the Bending
protein traveling along the gene to a spot between
the enhancer region and the promoter region. Once at this halfway
spot the protein bends the DNA strand so that the activator proteins at
the enchancer region are toughing the basal factors at the promoter region.
This combining of the proteins stimulates RNA
polymerase to do its work.
RNA polymerase is an enzyme
that more or less does the same thing that DNA helicase and polymerase
do. It begins at the Promoter Region of the gene and unzips the DNA
strand. Next, it constructs a polynucleotide chain of RNA (ribonucleic
acid) that compliments the DNA bases. This enzyme pairs RNA nucleotides
with the original DNA nucleotides with the rule of C=G and A=U. U
being Uracil takes the place of Thymine on the RNA strand that is forming.
As separate RNA nucleotides pair up with the bases of the DNA strand the
enzyme bonds them into an polynucleotide chain of messanger RNA (mRNA).
When the RNA polymerase is finished, it drags the
mRNA strand away from the DNA strand outside of the nucleus of the cell
into the cytoplasm while the DNA strand "zips" up to its original form.
Introns
Scientists have determined that
up to 70 percent of the RNA that is made through transcription by copying
DNA is unneeded. One term for this unneeded DNA is "Junk
DNA". It is not known why there is so much
junk DNA, but it possibly could lower the chances of mutations
in the DNA sequence that could cause a disease, or a deformity. This
could be true since the mutations have a greater chance of happening to
the junk DNA since there is more of it. Since there is so much "Junk
DNA" in the mRNA strand, it needs to be removed so the correct protein
can be assembled. As the mRNA is taken into the cytoplasm of the
cell, an enzyme called a spliceosome
runs along the polynucleotide chain to determine what part of the DNA strand
should be cut out and discarded. A string of unnecessary mRNA is
called an intron.
When the sliceosome finds an intron it pulls the RNA together so that the
intron loops away from the strand. Then it cuts out the intron and
bonds the two ends together. Once the introns are cut out of the
mRNA it is taken into the cytoplasm to undergo the last stage of transcription,
protein synthesis.
Protein Synthesis
Once the mRNA is outside of the
nucleus, the protein is made. A special component of the cell called
a Ribosome
runs along the strand to determine which amino acids to bond together to
make a protein. The ribosome reads every base in groups of three.
These groups are called codons.
Thus, a codon could be ACG, UGA, etc.
Anti-codons
Changing focus. There is
a different kind of RNA called tRNA or transfer RNA. Transfer RNA
units are simple because they are made of RNA which is attached to a certain
amino acid. On these units of tRNA a special group of three bases
distinguish what amino acid is attached to it. This special group
of three bases is called an anti-codon
because the ribosome pairs up anti-codons with codons. Each anti-codon
is the exact compliment of bases as its codon. For example:
| Codons |
GAC |
UCC |
CGG |
UAU |
| Anti-codons |
CUG |
AGG |
GCC |
AUA |
Ribosome
Back to the ribosome. As
the ribosome runs along the mRNA strand, it reads the codons. When
the ribosome comes to the codon, AUG, it places its matching anti-codon
next to it and uses the amino acid, methionine, that accompanies this anti-codon
as the first amino acid in the amino acid chain. Then it reads the
next codon and the procedure is repeated, but it now bonds the first amino
acid to the second one. This process of reading the codons, matching
them with their anti-codons, and bonding the amino acids together is continued
until the ribosome reads a triplet of UAA, UAC, or UGA. These codons
tell the ribosome to stop bonding the amino acids together. Once
the Ribosome is finished bonding the amino acids together into what is
called a polypeptide chain (not to be confused with polynucleotide chain),
named because of the type of bond between the amino acids, the protein
is finished being made and transcription is complete.
A Point to Remember
AUG is the start codon which tells
the ribosome to begin making the polypeptide chain. UAA, UAC, and
UGA are stop codons which tell the ribosome to stop making the polypeptide
chain.
Links
DNA: Structure and Function
DNA the Code of Life
Nucleic Acids
Replication